HL_7NHN_098

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUUAGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_098 not in the Motif Atlas

Geometric match to HL_3R4F_001

Geometric discrepancy: 0.1906

The information below is about HL_3R4F_001

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

7NHN|1|a|A|1144
7NHN|1|a|U|1145
7NHN|1|a|U|1146
7NHN|1|a|U|1147
7NHN|1|a|A|1148
7NHN|1|a|G|1149
7NHN|1|a|U|1150
7NHN|1|a|U|1151

Current chains

Chain a

16S rRNA

Nearby chains

Chain j

30S ribosomal protein S9