HL_7NQH_007

3D structure

PDB id

7NQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NQH_007 not in the Motif Atlas

Homologous match to HL_4LFB_010

Geometric discrepancy: 0.2576

The information below is about HL_4LFB_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7NQH|1|AA|C|198
7NQH|1|AA|G|199
7NQH|1|AA|A|200
7NQH|1|AA|A|201
7NQH|1|AA|A|202
7NQH|1|AA|G|203

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AP

28S ribosomal protein S16, mitochondrial

Chain Ad

Mitochondrial ribosomal protein S26

Chain Aj

mS34

Chain Ap

28S ribosomal protein S18b, mitochondrial