HL_7NQL_024

3D structure

PDB id

7NQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCCAUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NQL_024 not in the Motif Atlas

Geometric match to HL_4TUE_034

Geometric discrepancy: 0.1216

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

7NQL|1|AV|G|28
7NQL|1|AV|C|29
7NQL|1|AV|C|30
7NQL|1|AV|C|31
7NQL|1|AV|A|32
7NQL|1|AV|U|33
7NQL|1|AV|A|34
7NQL|1|AV|C|35
7NQL|1|AV|C|36

Current chains

Chain AV

fMet-tRNAMet (P site)

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AI

uS9m

Chain AX

mRNA