HL_7NQL_070

3D structure

PDB id

7NQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAAAGA

Length

8 nucleotides

Bulged bases

7NQL|1|BA|A|272, 7NQL|1|BA|A|274, 7NQL|1|BA|G|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NQL_070 not in the Motif Atlas

Geometric match to HL_4WF9_071

Geometric discrepancy: 0.3976

The information below is about HL_4WF9_071

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7NQL|1|BA|U|270
7NQL|1|BA|U|271
7NQL|1|BA|A|272
7NQL|1|BA|A|273
7NQL|1|BA|A|274
7NQL|1|BA|A|275
7NQL|1|BA|G|276
7NQL|1|BA|A|277

Current chains

Chain BA

16S rRNA

Nearby chains

Chain An

Aurora kinase A interacting protein 1

Chain BD

uL2m

Chain Ba

Mitochondrial ribosomal protein L37