HL_7NRC_005

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

7NRC|1|LA|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1299

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7NRC|1|LA|U|194
7NRC|1|LA|U|195
7NRC|1|LA|G|196
7NRC|1|LA|G|197
7NRC|1|LA|A|198
7NRC|1|LA|A|199
7NRC|1|LA|C|200
7NRC|1|LA|A|201

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain La

60S ribosomal protein L26-A

Chain Lg

60S ribosomal protein L32