HL_7NRC_016

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_016 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0778

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NRC|1|LA|U|707
7NRC|1|LA|G|708
7NRC|1|LA|A|709
7NRC|1|LA|A|710
7NRC|1|LA|A|711
7NRC|1|LA|G|712

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LN

60S ribosomal protein L13-A

Chain LS

60S ribosomal protein L18-A

Chain Lc

60S ribosomal protein L28

Chain Lk

60S ribosomal protein L36-A