HL_7NRC_028

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_028 not in the Motif Atlas

Geometric match to HL_5TBW_028

Geometric discrepancy: 0.3845

The information below is about HL_5TBW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7NRC|1|LA|G|1266
7NRC|1|LA|U|1267
7NRC|1|LA|G|1268
7NRC|1|LA|U|1269
7NRC|1|LA|A|1270
7NRC|1|LA|A|1271
7NRC|1|LA|C|1272
7NRC|1|LA|A|1273
7NRC|1|LA|A|1274
7NRC|1|LA|C|1275

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain So

Ribosome-interacting GTPase 2