HL_7NRC_035

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

7NRC|1|LA|U|1606, 7NRC|1|LA|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_035 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1082

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7NRC|1|LA|G|1599
7NRC|1|LA|U|1600
7NRC|1|LA|U|1601
7NRC|1|LA|A|1602
7NRC|1|LA|A|1603
7NRC|1|LA|G|1604
7NRC|1|LA|A|1605
7NRC|1|LA|U|1606
7NRC|1|LA|U|1607
7NRC|1|LA|C|1608

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain LZ

60S ribosomal protein L25

Chain Li

60S ribosomal protein L34-A