HL_7NRC_055
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 7NRC|1|LA|G|2618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRC_055 not in the Motif Atlas
- Homologous match to HL_5TBW_054
- Geometric discrepancy: 0.1526
- The information below is about HL_5TBW_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
7NRC|1|LA|C|2616
7NRC|1|LA|U|2617
7NRC|1|LA|G|2618
7NRC|1|LA|G|2619
7NRC|1|LA|G|2620
7NRC|1|LA|G|2621
7NRC|1|LA|C|2622
7NRC|1|LA|G|2623
7NRC|1|LA|G|2624
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LL
- 60S ribosomal protein L10
- Chain Ld
- 60S ribosomal protein L29
- Chain Ls
- eiF5A
- Chain Sn
- Transfer RNA; tRNA
Coloring options: