HL_7NRC_060

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_060 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.0516

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NRC|1|LA|U|2744
7NRC|1|LA|G|2745
7NRC|1|LA|A|2746
7NRC|1|LA|A|2747
7NRC|1|LA|A|2748
7NRC|1|LA|G|2749

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LG

60S ribosomal protein L5

Chain LV

60S ribosomal protein L21-A