HL_7NRC_065

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_065 not in the Motif Atlas

Homologous match to HL_5TBW_064

Geometric discrepancy: 0.0705

The information below is about HL_5TBW_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NRC|1|LA|C|2963
7NRC|1|LA|G|2964
7NRC|1|LA|U|2965
7NRC|1|LA|G|2966
7NRC|1|LA|A|2967
7NRC|1|LA|G|2968

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain Ls

eiF5A

Chain Sn

Transfer RNA; tRNA