3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUAUUC
Length
6 nucleotides
Bulged bases
7NRC|1|LC|U|125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7NRC_077 not in the Motif Atlas
Homologous match to HL_5TBW_076
Geometric discrepancy: 0.1577
The information below is about HL_5TBW_076
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_45177.3
Basepair signature
cWW-F-F-F
Number of instances in this motif group
3

Unit IDs

7NRC|1|LC|G|124
7NRC|1|LC|U|125
7NRC|1|LC|A|126
7NRC|1|LC|U|127
7NRC|1|LC|U|128
7NRC|1|LC|C|129

Current chains

Chain LC
5.8S rRNA (158-MER)

Nearby chains

Chain LA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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