HL_7NRC_077

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

7NRC|1|LC|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRC_077 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.1577

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7NRC|1|LC|G|124
7NRC|1|LC|U|125
7NRC|1|LC|A|126
7NRC|1|LC|U|127
7NRC|1|LC|U|128
7NRC|1|LC|C|129

Current chains

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA