3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CAAUUUAUACAG
Length
12 nucleotides
Bulged bases
7NRC|1|S2|U|74, 7NRC|1|S2|U|75, 7NRC|1|S2|U|77
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7NRC_079 not in the Motif Atlas
Geometric match to HL_5NFV_001
Geometric discrepancy: 0.11
The information below is about HL_5NFV_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69752.2
Basepair signature
cWW-F
Number of instances in this motif group
7

Unit IDs

7NRC|1|S2|C|70
7NRC|1|S2|A|71
7NRC|1|S2|A|72
7NRC|1|S2|U|73
7NRC|1|S2|U|74
7NRC|1|S2|U|75
7NRC|1|S2|A|76
7NRC|1|S2|U|77
7NRC|1|S2|A|78
7NRC|1|S2|C|79
7NRC|1|S2|A|80
7NRC|1|S2|G|81

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain ST
40S ribosomal protein S6-A

Coloring options:


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