3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UGGCCGGUCGGAUUUCCA
Length
18 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7NRC|1|S2|U|650
7NRC|1|S2|G|651
7NRC|1|S2|G|652
7NRC|1|S2|C|653
7NRC|1|S2|C|654
7NRC|1|S2|G|655
7NRC|1|S2|G|656
7NRC|1|S2|U|657
7NRC|1|S2|C|658
7NRC|1|S2|G|676
7NRC|1|S2|G|677
7NRC|1|S2|A|678
7NRC|1|S2|U|679
7NRC|1|S2|U|680
7NRC|1|S2|U|681
7NRC|1|S2|C|682
7NRC|1|S2|C|683
7NRC|1|S2|A|684

Current chains

Chain S2
18S rRNA (1771-MER)

Nearby chains

Chain SW
40S ribosomal protein S9-A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1991 s