HL_7NRC_116
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACUUUUAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRC_116 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.1482
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
7NRC|1|Sm|A|31
7NRC|1|Sm|C|32
7NRC|1|Sm|U|33
7NRC|1|Sm|U|34
7NRC|1|Sm|U|35
7NRC|1|Sm|U|36
7NRC|1|Sm|A|37
7NRC|1|Sm|A|38
7NRC|1|Sm|U|39
Current chains
- Chain Sm
- tRNA (76-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sg
- 40S ribosomal protein S30-A
- Chain Sl
- RNA (5'-R(P*AP*UP*GP*AP*AP*A)-3')
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