HL_7NRC_118
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGUGGAAG
- Length
- 9 nucleotides
- Bulged bases
- 7NRC|1|Sn|U|16, 7NRC|1|Sn|G|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRC_118 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1542
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
7NRC|1|Sn|C|13
7NRC|1|Sn|A|14
7NRC|1|Sn|G|15
7NRC|1|Sn|U|16
7NRC|1|Sn|G|18
7NRC|1|Sn|G|19
7NRC|1|Sn|A|20
7NRC|1|Sn|A|21
7NRC|1|Sn|G|22
Current chains
- Chain Sn
- tRNA (75-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- 60S ribosomal protein L11-B
- Chain Lq
- 60S ribosomal protein L42-A
- Chain Ls
- eiF5A
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