HL_7NSI_008

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSI_008 not in the Motif Atlas

Geometric match to HL_1JID_001

Geometric discrepancy: 0.2931

The information below is about HL_1JID_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7NSI|1|AA|C|248
7NSI|1|AA|C|249
7NSI|1|AA|A|250
7NSI|1|AA|C|251
7NSI|1|AA|C|252
7NSI|1|AA|G|253

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

Mitoribosomal protein us12m, mrps12

Chain Ap

28S ribosomal protein S18b, mitochondrial