HL_7NSI_050

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UUGGGGUGA

Length

9 nucleotides

Bulged bases

7NSI|1|BA|G|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSI_050 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1634

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7NSI|1|BA|U|1148
7NSI|1|BA|U|1149
7NSI|1|BA|G|1150
7NSI|1|BA|G|1151
7NSI|1|BA|G|1152
7NSI|1|BA|G|1153
7NSI|1|BA|U|1154
7NSI|1|BA|G|1155
7NSI|1|BA|A|1156

Current chains

Chain BA

16S rRNA

Nearby chains

Chain B0

39S ribosomal protein L27, mitochondrial

Chain BG

Ribosome-recycling factor, mitochondrial

Chain BQ

39S ribosomal protein L16, mitochondrial