HL_7NSI_055

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGUUCCUAU

Length

9 nucleotides

Bulged bases

7NSI|1|BA|U|1296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSI_055 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2422

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7NSI|1|BA|A|1294
7NSI|1|BA|G|1295
7NSI|1|BA|U|1296
7NSI|1|BA|U|1297
7NSI|1|BA|C|1298
7NSI|1|BA|C|1299
7NSI|1|BA|U|1300
7NSI|1|BA|A|1301
7NSI|1|BA|U|1302

Current chains

Chain BA

16S rRNA

Nearby chains

Chain B9

Ribosomal protein

Chain Bq

39S ribosomal protein L54, mitochondrial