HL_7NSO_001

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAUUGGUAGAC

Length

13 nucleotides

Bulged bases

7NSO|1|8|U|16, 7NSO|1|8|U|17, 7NSO|1|8|G|18, 7NSO|1|8|G|19, 7NSO|1|8|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSO_001 not in the Motif Atlas

Homologous match to HL_5AH5_005

Geometric discrepancy: 0.2948

The information below is about HL_5AH5_005

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_18470.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7NSO|1|8|G|12
7NSO|1|8|G|13
7NSO|1|8|A|14
7NSO|1|8|A|15
7NSO|1|8|U|16
7NSO|1|8|U|17
7NSO|1|8|G|18
7NSO|1|8|G|19
7NSO|1|8|U|20
7NSO|1|8|A|21
7NSO|1|8|G|22
7NSO|1|8|A|23
7NSO|1|8|C|24

Current chains

Chain 8

PtRNA-Leu

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5