HL_7NSO_013

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7NSO|1|A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSO_013 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.0868

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7NSO|1|A|C|305
7NSO|1|A|U|306
7NSO|1|A|G|307
7NSO|1|A|G|308
7NSO|1|A|A|309
7NSO|1|A|A|310
7NSO|1|A|A|311
7NSO|1|A|G|312

Current chains

Chain A

23S rRNA (2903-MER)

Nearby chains

Chain U

50S ribosomal protein L24