HL_7NSO_041

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

7NSO|1|A|C|1493, 7NSO|1|A|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NSO_041 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1309

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7NSO|1|A|G|1492
7NSO|1|A|C|1493
7NSO|1|A|A|1494
7NSO|1|A|A|1495
7NSO|1|A|A|1496
7NSO|1|A|U|1497
7NSO|1|A|C|1498

Current chains

Chain A

23S rRNA (2903-MER)

Nearby chains

Chain C

50S ribosomal protein L2