HL_7NSP_109
3D structure
- PDB id
- 7NSP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCUACGAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NSP_109 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.2125
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
7NSP|1|v|G|32
7NSP|1|v|C|33
7NSP|1|v|U|34
7NSP|1|v|A|35
7NSP|1|v|C|36
7NSP|1|v|G|37
7NSP|1|v|A|38
7NSP|1|v|A|39
7NSP|1|v|C|40
Current chains
- Chain v
- A-tRNA (Arg)
Nearby chains
- Chain 6
- mRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- 30S ribosomal protein S3
- Chain l
- 30S ribosomal protein S12
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