HL_7NWH_005

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7NWH|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3358

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7NWH|1|5|U|204
7NWH|1|5|C|205
7NWH|1|5|U|206
7NWH|1|5|G|207
7NWH|1|5|A|208
7NWH|1|5|U|209
7NWH|1|5|C|210
7NWH|1|5|G|211

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain Y

Ribosomal protein L26

Chain e

Ribosomal protein L32