HL_7NWH_024

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7NWH|1|5|A|1630, 7NWH|1|5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_024 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.212

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

7NWH|1|5|G|1627
7NWH|1|5|C|1628
7NWH|1|5|G|1629
7NWH|1|5|A|1630
7NWH|1|5|A|1631
7NWH|1|5|A|1632
7NWH|1|5|G|1633
7NWH|1|5|A|1634
7NWH|1|5|C|1635

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain j

Ribosomal protein L37