3D structure

PDB id
7NWH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
4.1 Å

Loop

Sequence
GGUGGCCAUGGAAGUCGGAAUCC
Length
23 nucleotides
Bulged bases
7NWH|1|5|G|1981, 7NWH|1|5|U|1992
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7NWH|1|5|G|1972
7NWH|1|5|G|1973
7NWH|1|5|U|1974
7NWH|1|5|G|1975
7NWH|1|5|G|1976
7NWH|1|5|C|1977
7NWH|1|5|C|1978
7NWH|1|5|A|1979
7NWH|1|5|U|1980
7NWH|1|5|G|1981
7NWH|1|5|G|1982
7NWH|1|5|A|1983
7NWH|1|5|A|1984
7NWH|1|5|G|1985
7NWH|1|5|U|1986
7NWH|1|5|C|1987
7NWH|1|5|G|1988
7NWH|1|5|G|1989
7NWH|1|5|A|1990
7NWH|1|5|A|1991
7NWH|1|5|U|1992
7NWH|1|5|C|1993
7NWH|1|5|C|1994

Current chains

Chain 5
28S Ribosomal RNA

Nearby chains

Chain I
60S ribosomal protein L10
Chain ii
Eukaryotic peptide chain release factor subunit 1
Chain s
60S acidic ribosomal protein P0
Chain t
uL12

Coloring options:

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