HL_7NWH_040

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_040 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.1867

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NWH|1|5|G|2578
7NWH|1|5|G|2579
7NWH|1|5|U|2580
7NWH|1|5|A|2581
7NWH|1|5|A|2582
7NWH|1|5|C|2583

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L27

Chain g

60S ribosomal protein L34