HL_7NWH_048

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGGCA

Length

5 nucleotides

Bulged bases

7NWH|1|5|G|3597

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_048 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.3843

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7NWH|1|5|U|2900
7NWH|1|5|G|2901
7NWH|1|5|G|3597
7NWH|1|5|C|3598
7NWH|1|5|A|3599

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19