HL_7NWH_060

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_060 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2288

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7NWH|1|5|G|4250
7NWH|1|5|A|4251
7NWH|1|5|C|4252
7NWH|1|5|A|4253
7NWH|1|5|G|4254
7NWH|1|5|A|4255
7NWH|1|5|A|4256
7NWH|1|5|A|4257
7NWH|1|5|C|4258

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L11