HL_7NWH_071

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7NWH|1|5|G|4694, 7NWH|1|5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_071 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1527

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7NWH|1|5|C|4688
7NWH|1|5|U|4689
7NWH|1|5|G|4690
7NWH|1|5|A|4691
7NWH|1|5|A|4692
7NWH|1|5|C|4693
7NWH|1|5|G|4694
7NWH|1|5|C|4695
7NWH|1|5|C|4696
7NWH|1|5|U|4697
7NWH|1|5|C|4698
7NWH|1|5|U|4699
7NWH|1|5|A|4700
7NWH|1|5|A|4701
7NWH|1|5|G|4702

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain H

L9

Chain O

60S RIBOSOMAL PROTEIN UL13

Chain m

60S RIBOSOMAL PROTEIN EL40