HL_7NWH_073

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

7NWH|1|5|A|4910, 7NWH|1|5|A|4911, 7NWH|1|5|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_073 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.296

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7NWH|1|5|C|4906
7NWH|1|5|G|4907
7NWH|1|5|G|4908
7NWH|1|5|A|4909
7NWH|1|5|A|4910
7NWH|1|5|A|4911
7NWH|1|5|G|4912
7NWH|1|5|G|4913
7NWH|1|5|G|4914
7NWH|1|5|G|4915

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

60S RIBOSOMAL PROTEIN UL13