HL_7NWH_085

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_085 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2872

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7NWH|1|9|C|196
7NWH|1|9|U|197
7NWH|1|9|U|198
7NWH|1|9|C|199
7NWH|1|9|G|200
7NWH|1|9|C|201
7NWH|1|9|G|202
7NWH|1|9|G|203

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain II

40S ribosomal protein S8