HL_7NWH_087

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCCGG

Length

5 nucleotides

Bulged bases

7NWH|1|9|C|323

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_087 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.2566

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7NWH|1|9|C|321
7NWH|1|9|C|322
7NWH|1|9|C|323
7NWH|1|9|G|329
7NWH|1|9|G|330

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain W

60S ribosomal protein L24-like protein