HL_7NWH_091

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7NWH|1|9|A|464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_091 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.2112

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7NWH|1|9|C|462
7NWH|1|9|C|463
7NWH|1|9|A|464
7NWH|1|9|A|465
7NWH|1|9|G|466
7NWH|1|9|G|467

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain V

eL14

Chain jj

eRF3a