HL_7NWH_094

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_094 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1987

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7NWH|1|9|A|569
7NWH|1|9|C|570
7NWH|1|9|U|571
7NWH|1|9|U|572
7NWH|1|9|U|573
7NWH|1|9|A|574
7NWH|1|9|A|575
7NWH|1|9|A|576
7NWH|1|9|U|577
7NWH|1|9|C|578
7NWH|1|9|C|579
7NWH|1|9|U|580
7NWH|1|9|U|581

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24