HL_7NWH_100

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_100 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.2147

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NWH|1|9|C|994
7NWH|1|9|G|995
7NWH|1|9|A|996
7NWH|1|9|A|997
7NWH|1|9|A|998
7NWH|1|9|G|999

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain NN

ribosomal protein uS15

Chain aa

40S ribosomal protein S26