HL_7NWH_106

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7NWH|1|9|U|1300

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_106 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.5104

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7NWH|1|9|A|1295
7NWH|1|9|U|1296
7NWH|1|9|U|1297
7NWH|1|9|G|1298
7NWH|1|9|A|1299
7NWH|1|9|U|1300
7NWH|1|9|A|1301
7NWH|1|9|G|1302
7NWH|1|9|C|1303
7NWH|1|9|U|1304

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain PP

40S ribosomal protein uS19

Chain dd

S29

Chain ff

40S ribosomal protein S27a