HL_7NWH_111

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWH_111 not in the Motif Atlas

Geometric match to HL_3W3S_003

Geometric discrepancy: 0.2763

The information below is about HL_3W3S_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7NWH|1|9|C|1565
7NWH|1|9|G|1566
7NWH|1|9|G|1567
7NWH|1|9|C|1568
7NWH|1|9|A|1569
7NWH|1|9|G|1570

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain PP

40S ribosomal protein uS19

Chain SS

40S ribosomal protein uS13

Chain TT

eS19