HL_7NWI_008

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7NWI|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_008 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.326

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7NWI|1|5|U|204
7NWI|1|5|C|205
7NWI|1|5|U|206
7NWI|1|5|G|207
7NWI|1|5|A|208
7NWI|1|5|U|209
7NWI|1|5|C|210
7NWI|1|5|G|211

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain Y

Ribosomal protein L26