HL_7NWI_016

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGAAGAG

Length

7 nucleotides

Bulged bases

7NWI|1|5|A|1255

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_016 not in the Motif Atlas

Geometric match to HL_5J7L_026

Geometric discrepancy: 0.376

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7NWI|1|5|C|1252
7NWI|1|5|G|1253
7NWI|1|5|A|1254
7NWI|1|5|A|1255
7NWI|1|5|G|1256
7NWI|1|5|A|1257
7NWI|1|5|G|1258

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains