HL_7NWI_018

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UCGCACGAAA

Length

10 nucleotides

Bulged bases

7NWI|1|5|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|5|U|1364
7NWI|1|5|C|1365
7NWI|1|5|G|1366
7NWI|1|5|C|1367
7NWI|1|5|A|1368
7NWI|1|5|C|1369
7NWI|1|5|G|1370
7NWI|1|5|A|1371
7NWI|1|5|A|1372
7NWI|1|5|A|1373

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4

Chain L

L13

Chain N

Ribosomal protein L15

Chain Y

Ribosomal protein L26