HL_7NWI_021
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CCUCUCCAGUCCG
- Length
- 13 nucleotides
- Bulged bases
- 7NWI|1|5|C|1439
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NWI_021 not in the Motif Atlas
- Geometric match to HL_1GID_008
- Geometric discrepancy: 0.3288
- The information below is about HL_1GID_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50621.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7NWI|1|5|C|1436
7NWI|1|5|C|1437
7NWI|1|5|U|1438
7NWI|1|5|C|1439
7NWI|1|5|U|1440
7NWI|1|5|C|1441
7NWI|1|5|C|1442
7NWI|1|5|A|1443
7NWI|1|5|G|1444
7NWI|1|5|U|1445
7NWI|1|5|C|1446
7NWI|1|5|C|1447
7NWI|1|5|G|1448
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain F
- uL30
- Chain Q
- Ribosomal_L18e/L15P domain-containing protein
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