HL_7NWI_023
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NWI_023 not in the Motif Atlas
- Homologous match to HL_5TBW_019
- Geometric discrepancy: 0.112
- The information below is about HL_5TBW_019
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
7NWI|1|5|G|1561
7NWI|1|5|G|1562
7NWI|1|5|A|1563
7NWI|1|5|A|1564
7NWI|1|5|A|1565
7NWI|1|5|C|1566
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain LL
- 40S ribosomal protein S11
- Chain NN
- ribosomal protein uS15
- Chain p
- ribosomal protein eL43
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