HL_7NWI_029

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

7NWI|1|5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_029 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.1109

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NWI|1|5|G|1864
7NWI|1|5|G|1865
7NWI|1|5|U|1866
7NWI|1|5|A|1867
7NWI|1|5|A|1868
7NWI|1|5|G|1869
7NWI|1|5|C|1870

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain I

60S ribosomal protein L10