HL_7NWI_031
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 7NWI|1|5|G|1981, 7NWI|1|5|A|1984, 7NWI|1|5|C|1987
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NWI_031 not in the Motif Atlas
- Geometric match to HL_4KR9_003
- Geometric discrepancy: 0.3528
- The information below is about HL_4KR9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_16651.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
7NWI|1|5|C|1978
7NWI|1|5|A|1979
7NWI|1|5|U|1980
7NWI|1|5|G|1981
7NWI|1|5|G|1982
7NWI|1|5|A|1983
7NWI|1|5|A|1984
7NWI|1|5|G|1985
7NWI|1|5|U|1986
7NWI|1|5|C|1987
7NWI|1|5|G|1988
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain t
- L12
Coloring options: