HL_7NWI_032

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GAGUGUGUAACAACUC

Length

16 nucleotides

Bulged bases

7NWI|1|5|A|2002, 7NWI|1|5|U|2008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|5|G|2001
7NWI|1|5|A|2002
7NWI|1|5|G|2003
7NWI|1|5|U|2004
7NWI|1|5|G|2005
7NWI|1|5|U|2006
7NWI|1|5|G|2007
7NWI|1|5|U|2008
7NWI|1|5|A|2009
7NWI|1|5|A|2010
7NWI|1|5|C|2011
7NWI|1|5|A|2012
7NWI|1|5|A|2013
7NWI|1|5|C|2014
7NWI|1|5|U|2015
7NWI|1|5|C|2016

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain m

60S ribosomal protein L40

Chain t

L12