HL_7NWI_036

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7NWI|1|5|G|2421, 7NWI|1|5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_036 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.2001

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7NWI|1|5|A|2420
7NWI|1|5|G|2421
7NWI|1|5|C|2422
7NWI|1|5|A|2423
7NWI|1|5|G|2424
7NWI|1|5|U|2425
7NWI|1|5|U|2426

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain P

L17

Chain R

60S ribosomal protein L19

Chain l

ribosomal protein eL39