HL_7NWI_040
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CGCGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NWI_040 not in the Motif Atlas
- Geometric match to HL_5U3G_001
- Geometric discrepancy: 0.2887
- The information below is about HL_5U3G_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
7NWI|1|5|C|2561
7NWI|1|5|G|2562
7NWI|1|5|C|2563
7NWI|1|5|G|2564
7NWI|1|5|A|2565
7NWI|1|5|G|2566
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
No other chains within 10ÅColoring options: