HL_7NWI_044

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_044 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1422

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7NWI|1|5|G|2705
7NWI|1|5|G|2706
7NWI|1|5|U|2707
7NWI|1|5|U|2708
7NWI|1|5|C|2709
7NWI|1|5|C|2710

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain R

60S ribosomal protein L19