HL_7NWI_051

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7NWI|1|5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWI_051 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.307

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NWI|1|5|C|3668
7NWI|1|5|G|3669
7NWI|1|5|C|3670
7NWI|1|5|G|3671
7NWI|1|5|G|3672
7NWI|1|5|C|3673
7NWI|1|5|G|3674

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain A

L8

Chain N

Ribosomal protein L15